X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=a6145c1515138ae6167f8225050e8e953d3ca456;hb=3ea56b3730e5115138af264f5b5408104ebd9c20;hp=9ae45b93ef749d2a9c88704f9690850be871ef30;hpb=e8f8b50cbf08d269bc53a9f51505689ff3674730;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index 9ae45b9..a6145c1 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -27,7 +27,7 @@
 				<tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
 				<tocitem text="PDB Structure Chooser" target="pdbchooser" />
 				<tocitem text="Chimera Viewer" target="chimera" />
-				<tocitem text="Select columns by annotation" target="selectcolbyannot" />
+				<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 				<tocitem text="Latest Release Notes" target="release"/>
 		</tocitem>
 		
@@ -49,7 +49,7 @@
 		<tocitem text="Viewing Trees" target="treeviewer" expand="false" />
 		<tocitem text="Fetching Sequences" target="seqfetch" />		
 		
-		<tocitem text="Select columns by annotation" target="selectcolbyannot" />
+		<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 		
 		<tocitem text="Nucleic Acid Support" target="nucleicAcids" expand="false">
 			<tocitem text="Viewing RNA structure" target="varna" />
@@ -107,7 +107,7 @@
 			<tocitem text="By RNA Helices" target="colours.rnahelices" />
 		</tocitem>
 		
-		<tocitem text="Calculations" target="calculations" expand="false">
+		<tocitem text="Calculations" expand="false">
 			<tocitem text="Sorting alignments" target="sorting" />
 			<tocitem text="Calculating trees" target="trees" />
 			<tocitem text="Principal Component Analysis" target="pca" />
@@ -127,14 +127,13 @@
 			<tocitem text="Consensus" target="calcs.consensus" />
 			<tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus" />
 			<tocitem text="Annotations File Format" target="annotations.fileformat" />
-			<tocitem text="Select Column by Annotation" target="calcs.annotation" />
+			<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 		</tocitem>
 		<tocitem text="3D Structure Data" target="viewingpdbs" expand="false">
 			<tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
 			<tocitem text="PDB Structure Chooser" target="pdbchooser" />
 			<tocitem text="Jmol Viewer" target="pdbjmol" />
-			<tocitem text="Chimera Viewer" target="chimera" />
-			<tocitem text="Simple PDB Viewer" target="pdbmcviewer" />
+			<tocitem text="Chimera Viewer" target="chimera" />			
 		</tocitem>
 		<tocitem text="Viewing RNA structures" target="varna" expand="false"/>
 		<tocitem text="VAMSAS Data Exchange" target="vamsas">
@@ -151,7 +150,7 @@
 				<tocitem text="Annotations Menu" target="alwAnnotations" />
 				<tocitem text="Format Menu" target="alwFormat" />
 				<tocitem text="Colour Menu" target="alwColour" />
-				<tocitem text="Calculation Menu" target="alwCalc" />
+				<tocitem text="Calculate Menu" target="alwCalc" />
 				<tocitem text="Web Service Menu" target="wsMenu" />
 				<tocitem text="Annotation Panel Menu" target="annotPanelMenu" />
 				<tocitem text="Popup Menu" target="popMenu" />