X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=e27d41aa614b73743644d4576c95c5c0d68fd752;hb=b1ec3caa00df9beb437ca31647268158a79748c5;hp=f59dd70c33627c971a14e25fe75d702e2583595a;hpb=ee9e7bf2289ef0161307b23658ade7a908d80f14;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index f59dd70..e27d41a 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -1,20 +1,20 @@
 <?xml version="1.0" encoding="ISO-8859-1"  ?>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+  Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+  Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
+  
+  This file is part of Jalview.
+  
+  Jalview is free software: you can redistribute it and/or
+  modify it under the terms of the GNU General Public License 
+  as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+   
+  Jalview is distributed in the hope that it will be useful, but 
+  WITHOUT ANY WARRANTY; without even the implied warranty 
+  of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+  PURPOSE.  See the GNU General Public License for more details.
+  
+  You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 -->
 <!DOCTYPE toc PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp TOC Version 1.0//EN" "http://java.sun.com/products/javahelp/toc_1_0.dtd">
 <toc version="1.0">
@@ -22,6 +22,7 @@
 	<tocitem text="What's new" target="new" expand="true">
     <tocitem text="Protein Disorder Prediction" target="disorder"/>
     <tocitem text="Alignment Conservation Analysis" target="aacon"/>
+    	<tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
 		<tocitem text="Viewing RNA structure" target="varna" />
 		<tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus"/>
 		<tocitem text="RNA Helices coloring" target="colours.rnahelices"/>
@@ -65,6 +66,7 @@
                 <tocitem text="Multiple Alignment Subjobs" target="msaservice"/>
             </tocitem>
           <tocitem text="Secondary Structure Prediction" target="jnet"/>
+          <tocitem text="RNAalifold RNA Secondary Structure Prediction" target="rnaalifold"/>
           <tocitem text="Protein Disorder Prediction" target="disorder"/>
           <tocitem text="Alignment Conservation Analysis" target="aacon"/>
           <tocitem text="Multi-Harmony Alignment Analysis" target="shmrws"/>