X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2FhelpTOC.xml;h=fe8e1a9a67f620ed79e09cc988fbb7ee2b413671;hb=608002f963630dd631941e34f1a6a93b6dcbd823;hp=b9560041d2527453a3011f30cd827f0faa2c1d68;hpb=1a2d1358f3c22ff288abc6e25ab63adc7cf18a0a;p=jalview.git

diff --git a/help/helpTOC.xml b/help/helpTOC.xml
index b956004..fe8e1a9 100755
--- a/help/helpTOC.xml
+++ b/help/helpTOC.xml
@@ -27,7 +27,7 @@
 				<tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
 				<tocitem text="PDB Structure Chooser" target="pdbchooser" />
 				<tocitem text="Chimera Viewer" target="chimera" />
-				<tocitem text="Select columns by annotation" target="selectcolbyannot" />
+				<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 				<tocitem text="Latest Release Notes" target="release"/>
 		</tocitem>
 		
@@ -49,7 +49,7 @@
 		<tocitem text="Viewing Trees" target="treeviewer" expand="false" />
 		<tocitem text="Fetching Sequences" target="seqfetch" />		
 		
-		<tocitem text="Select columns by annotation" target="selectcolbyannot" />
+		<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 		
 		<tocitem text="Nucleic Acid Support" target="nucleicAcids" expand="false">
 			<tocitem text="Viewing RNA structure" target="varna" />
@@ -114,6 +114,7 @@
 			<tocitem text="Tree/PCA Input Data" target="recoverInputdata" />
 			<tocitem text="Pairwise Alignments" target="pairwise" />
 			<tocitem text="Remove Redundancy" target="redundancy" />
+			<tocitem text="Reference Sequences" target="referenceseq" />
 		</tocitem>
 		
 		<tocitem text="Sequence Annotations" target="seqannots"	expand="true">
@@ -126,7 +127,7 @@
 			<tocitem text="Consensus" target="calcs.consensus" />
 			<tocitem text="RNA Structure Consensus" target="calcs.alstrconsensus" />
 			<tocitem text="Annotations File Format" target="annotations.fileformat" />
-			<tocitem text="Select Column by Annotation" target="calcs.annotation" />
+			<tocitem text="Select Columns by Annotation" target="selectcolbyannot" />
 		</tocitem>
 		<tocitem text="3D Structure Data" target="viewingpdbs" expand="false">
 			<tocitem text="PDB Sequence Fetcher" target="pdbfetcher" />
@@ -150,7 +151,7 @@
 				<tocitem text="Annotations Menu" target="alwAnnotations" />
 				<tocitem text="Format Menu" target="alwFormat" />
 				<tocitem text="Colour Menu" target="alwColour" />
-				<tocitem text="Calculation Menu" target="alwCalc" />
+				<tocitem text="Calculate Menu" target="alwCalc" />
 				<tocitem text="Web Service Menu" target="wsMenu" />
 				<tocitem text="Annotation Panel Menu" target="annotPanelMenu" />
 				<tocitem text="Popup Menu" target="popMenu" />