X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2FcolumnFilterByAnnotation.html;fp=help%2Fhtml%2Fcalculations%2FcolumnFilterByAnnotation.html;h=a69e234af30af0d229adb4b28c92084736284919;hb=dee7812a050818dc8cd626edca3422e71f39403e;hp=c5f42df4c6b5f7c2fc987f3c8e48396d95a2e18b;hpb=c248aad32a357e7440b2e5ab3ea8c5fddbb26b84;p=jalview.git
diff --git a/help/html/calculations/columnFilterByAnnotation.html b/help/html/calculations/columnFilterByAnnotation.html
index c5f42df..a69e234 100644
--- a/help/html/calculations/columnFilterByAnnotation.html
+++ b/help/html/calculations/columnFilterByAnnotation.html
@@ -20,21 +20,21 @@
* The Jalview Authors are detailed in the 'AUTHORS' file.
-->
-Filter Columns by Annotation
+Select/Hide Columns by Annotation
- Filter Columns by Annotation
+ Select/Hide Columns by Annotation
- Jalview allows the columns of an alignment to be filtered using
+
From Jalview-2.9 columns of an alignment can be filtered using
any annotation rows added to that alignment.
- From "Select" menu
- → "Select by Annotation..." to bring
- up the Select by Annotation window. The filter options vary depending
+ To carry out this operation, navigate to "Select" menu
+ → "Select/Hide Columns by Annotation..." to bring
+ up the Select/Hide by Annotation window. The filter options vary depending
on the type of annotation selected. If an annotation that has a numeric
values is selected, the threshold filter option is activated as seen in the
- figure on the right below.
+ figure on the right below, otherwise the dialog will exclude the threshold filter option as seen in the figure on the left.
@@ -47,15 +47,14 @@
 
- - Select which annotation to base the filtering on using the
- top-most selection box.
+ - The target annotation row can be selected using the drop-down option menu in the top-most part of the window.
- Search Filter
- - When a text is entered in the textfield on the search
- filter section, the "Display Label" and "Description"
- checkboxes becomes selectable.
- - On selecting any of the checkboxes, a regular expresion
+
- When a text is entered in the text box within the Search
+ Filter section, the "Display Label" and "Description"
+ options becomes enabled for selection.
+ - On selecting any of the options, a regular expression
search (RegEx) is executed on the specified field of the current
annotation row selected, and the matching columns will be highlighted
in the alignment.
@@ -63,7 +62,7 @@
- Structure Filter
- Alignment columns can also be filtered by the type of
- secondary structure present in a choosen annotation row.
+ secondary structure present in a target annotation row.
- This can be achieved by ticking the type of structure you
wish to filter by under the structures filter section.
@@ -71,7 +70,7 @@
- This filter is only activated for annotation which contain
numeric values
- - Select whether to Filter the alignment above or below an
+
- Select whether to filter the alignment above or below an
adjustable threshold with the selection box within the threshold
filter section.
- Change the threshold value with the slider, or enter the
@@ -87,7 +86,7 @@
- While the "Hide" option enables the matching columns to
be hidden automatically during the filtering process.
- The "Ok" button applies the filter when clicked.
- - And finally, The "Cancel" button restores the alignment to its previous state before the filtering when clicked.
+
- And finally, the "Cancel" button restores the alignment to its previous state before any filtering was applied.