X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=12d832fb5b5c8cba9d7fc4fbe0ab4d2ef4eb050d;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=5a962a404ea84f735731205d409c32ec37a4aaef;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html
index 5a962a4..12d832f 100644
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,20 +1,21 @@
Alignment Consensus Annotation
@@ -30,6 +31,17 @@
Select the "Copy Consensus Sequence" entry from
the consensus annotation label to copy the alignment's consensus sequence to the
clipboard.
-
+
+Sequence logo
+ By clicking on the label you can also activate the sequence logo. It
+ indicates the relative amount of residues per column which can be
+ estimated by it's size in the logo. The tooltip of a column gives the
+ exact numbers for all occuring residues.
+
If columns of the alignment are very diverse, then it can
+ sometimes be difficult to see the sequence logo - in this case, right
+ click on the annotation row label and select
+ Normalise Consensus Logo to scale all columns of the
+ logo to the same height.
+