X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=5a962a404ea84f735731205d409c32ec37a4aaef;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html index e18e273..5a962a4 100644 --- a/help/html/calculations/consensus.html +++ b/help/html/calculations/consensus.html @@ -1,7 +1,7 @@ +Alignment Consensus Annotation + +

Alignment Consensus Annotation

+

The consensus displayed below the alignment is the percentage of the modal + residue per column. By default this calculation takes includes gaps in column. + You can choose to ignore gaps in the calculation by right clicking on the label + "Consensus" to the left of the consensus bar chart. +

If the modal value is shared by more than 1 residue, a "+" symbol + is used in the display for the simple reason that it is not possible to display + multiple characters in a single character space. +

Copying the consensus sequence

+

Select the "Copy Consensus Sequence" entry from +the consensus annotation label to copy the alignment's consensus sequence to the +clipboard. +

+ +