X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=7c566118fa3f4743e48a02fbe8bd7516764dc08f;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=7a1921c25430afcc853ed37d4abc07d25a436f2e;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html index 7a1921c..7c56611 100644 --- a/help/html/calculations/consensus.html +++ b/help/html/calculations/consensus.html @@ -1,27 +1,29 @@ + --> Alignment Consensus Annotation

Alignment Consensus Annotation

The consensus displayed below the alignment is the percentage of the modal - residue per column. By default this calculation takes includes gaps in column. + residue per column. By default this calculation includes gaps in columns. You can choose to ignore gaps in the calculation by right clicking on the label "Consensus" to the left of the consensus bar chart.

If the modal value is shared by more than 1 residue, a "+" symbol @@ -35,8 +37,8 @@ clipboard.

Sequence logo

By clicking on the label you can also activate the sequence logo. It indicates the relative amount of residues per column which can be - estimated by it's size in the logo. The tooltip of a column gives the - exact numbers for all occuring residues. + estimated by its size in the logo. The tooltip of a column gives the + exact numbers for all occurring residues.
If columns of the alignment are very diverse, then it can sometimes be difficult to see the sequence logo - in this case, right click on the annotation row label and select