X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=bc42278608eaff8e36a614587d0b875c377c4820;hb=91e9ddff22dd9406d8784b8a91f03d7b94b4a180;hp=71a1719f452f42f634fb138096c3b96d78a7ef9e;hpb=85fb1c79fd82d7eada801624f745635632be8362;p=jalview.git diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html index 71a1719..bc42278 100644 --- a/help/html/calculations/consensus.html +++ b/help/html/calculations/consensus.html @@ -1,4 +1,24 @@ + Alignment Consensus Annotation

Alignment Consensus Annotation

@@ -13,6 +33,17 @@

Select the "Copy Consensus Sequence" entry from the consensus annotation label to copy the alignment's consensus sequence to the clipboard. -

+ +

Sequence logo

+ By clicking on the label you can also activate the sequence logo. It + indicates the relative amount of residues per column which can be + estimated by its size in the logo. The tooltip of a column gives the + exact numbers for all occuring residues. +
If columns of the alignment are very diverse, then it can + sometimes be difficult to see the sequence logo - in this case, right + click on the annotation row label and select + Normalise Consensus Logo to scale all columns of the + logo to the same height. +