X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconsensus.html;h=bc42278608eaff8e36a614587d0b875c377c4820;hb=b0c310ec55943ba114a00ee581f6430d8dc945c7;hp=dfb568e99328b8333299e0747f28fe28c17dbddc;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git
diff --git a/help/html/calculations/consensus.html b/help/html/calculations/consensus.html
index dfb568e..bc42278 100644
--- a/help/html/calculations/consensus.html
+++ b/help/html/calculations/consensus.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
Alignment Consensus Annotation
Alignment Consensus Annotation
@@ -30,6 +33,17 @@
Select the "Copy Consensus Sequence" entry from
the consensus annotation label to copy the alignment's consensus sequence to the
clipboard.
-
+
+Sequence logo
+ By clicking on the label you can also activate the sequence logo. It
+ indicates the relative amount of residues per column which can be
+ estimated by its size in the logo. The tooltip of a column gives the
+ exact numbers for all occuring residues.
+
If columns of the alignment are very diverse, then it can
+ sometimes be difficult to see the sequence logo - in this case, right
+ click on the annotation row label and select
+ Normalise Consensus Logo to scale all columns of the
+ logo to the same height.
+