X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconservation.html;fp=help%2Fhtml%2Fcalculations%2Fconservation.html;h=cb3e7858b1f58fac0c9cc131b1b2facee91d3598;hb=230f5c014bd1b6ff2838eb677556fb9403db7662;hp=9641a8e443f6ccdc57e3fbeb93c22d37edde43a2;hpb=322603c39c5e60e4f7a6923ffa4695bc7d3576c4;p=jalview.git

diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html
index 9641a8e..cb3e785 100755
--- a/help/html/calculations/conservation.html
+++ b/help/html/calculations/conservation.html
@@ -44,8 +44,15 @@ is based on the one used in
 		grouping), and columns with mutations where all properties are
 		conserved are marked with a '+' (score of 10, indicating all
 		properties are conserved).</p>
-
-	<p><em>Colouring an alignment by conservation</em><br>
+  <p>
+    Mousing over a conservation histogram reveals a tooltip which
+    contains a series of symbols corresponding to the physicochemical
+    properties that are conserved amongst the amino acids observed at
+    each position. In these tooltips, the presence of <em>!</em> implies
+    that the lack of a particular physicochemical property is conserved
+    (e.g. !proline).
+  </p>
+  <p><em>Colouring an alignment by conservation</em><br>
 Conservation scores can be used to colour an alignment.  This is
 explained further in the help page for <a
 href="../colourSchemes/conservation.html">conservation colouring</a>.