X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconservation.html;h=453552535b69df8f86dfd4e7f209a731fb7b401c;hb=f269ceeb37293f592c4916dd91cff9c4fdd3f874;hp=9cb8ce1a95a9195f6b784d824e709a40cfc0add4;hpb=94115f9af30575885ef1e3f843e0dd381e579e08;p=jalview.git diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html index 9cb8ce1..4535525 100755 --- a/help/html/calculations/conservation.html +++ b/help/html/calculations/conservation.html @@ -40,8 +40,8 @@ 9 No. 6 (745-756)). View an HTML version of the paper + href="http://www.compbio.dundee.ac.uk/papers/amas/amas3d.html">View + an HTML version of the paper

Conservation is measured as a numerical index reflecting the @@ -68,13 +68,15 @@ Colouring an alignment by conservation
Conservation scores can be used to colour an alignment. This is explained further in the help page for conservation colouring. + href="../colourSchemes/conservation.html">conservation + colouring.

- Group conservation
- If sequence groups have been defined, then selecting option 'Group Conservation' in the Annotations menu will - result in Conservation being calculated for each group, as well as the alignment as a whole. + Group conservation
If sequence groups have + been defined, then selecting option 'Group Conservation' in the Annotations menu will + result in Conservation being calculated for each group, as well as + the alignment as a whole.