X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fconservation.html;h=ebba3ab15b8fedaba1854b9ee5e390b6645b3967;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=cf7faf549a3c32a75d51c0c90ec75386181250b5;hpb=9807ea8cc4e867378c52d51b832168d4bc611d29;p=jalview.git diff --git a/help/html/calculations/conservation.html b/help/html/calculations/conservation.html index cf7faf5..ebba3ab 100755 --- a/help/html/calculations/conservation.html +++ b/help/html/calculations/conservation.html @@ -1,4 +1,21 @@ + Alignment Conservation Annotation

Alignment Conservation Annotation

This is an automatically calculated quantitative alignment @@ -12,11 +29,11 @@ is based on the one used in No. 6 (745-756)).

-

Conservation is measured as a numerical index reflecting the -conservation of physico-chemical properties in the alignment: -Identities score highest, and the next most conserved group contain -substitutions to amino acids lying in the same physico-chemical -class.

+

Conservation is measured as a numerical index reflecting the conservation of + physico-chemical + properties in the alignment: Identities score highest, and the next most + conserved group contain substitutions to amino acids lying in the same physico-chemical + class.

Colouring an alignment by conservation
Conservation scores can be used to colour an alignment. This is