X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fpca.html;h=7ffb1602ae383c6319f561e57b20938cce04fcfa;hb=80ac7d84002118186a11658f38abfa5c4fe3d8da;hp=66dbabd5705044b66a2a328b516e869cda69dfe2;hpb=2273eba5668e5340354da60fed329c6c716cc439;p=jalview.git diff --git a/help/html/calculations/pca.html b/help/html/calculations/pca.html index 66dbabd..7ffb160 100755 --- a/help/html/calculations/pca.html +++ b/help/html/calculations/pca.html @@ -1,7 +1,7 @@ By default, -points are only associated with the alignment view from which the PCA -was calculated, but this may be changed via the View→Associate -Nodes sub-menu.

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Initially, the display shows the first three components of the -similarity space, but any eigenvector can be used by changing the -selected dimension for the x, y, or z axis through each ones menu -located below the 3d display. The Reset button will reset axis and rotation settings to their defaults.

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-The output of points and transformed point coordinates was added to the Jalview desktop in v2.7. -The Reset button and Change Parameters menu were added in Jalview 2.8. -Support for PAM250 based PCA was added in Jalview 2.8.1. +left-clicking and dragging the mouse over the display. --> + By default, points are only associated with the alignment view from + which the PCA was calculated, but this may be changed via the View→Associate + Nodes sub-menu. +

+

+ Initially, the display shows the first three components of the + similarity space, but any eigenvector can be used by changing the + selected dimension for the x, y, or z axis through each ones menu + located below the 3d display. The Reset + button will reset axis and rotation settings to their defaults. +

+

+

+ The output of points and transformed point coordinates was + added to the Jalview desktop in v2.7. The Reset button + and Change Parameters menu were added in Jalview 2.8. Support + for PAM250 based PCA was added in Jalview 2.8.1.