X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=254ae53d080d9f5f8a4bb05397bce55ea1a65e8f;hb=25687914d19af3fc0057e9465a29d2dc6a94f27a;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git
diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html
index e18e273..254ae53 100755
--- a/help/html/calculations/redundancy.html
+++ b/help/html/calculations/redundancy.html
@@ -1,18 +1,36 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+
+Removing Redundancy
+
+
+Removing redundancy
+Selecting the option in the Alignment window's Edit
+menu or pressing 'CONTROL+D' brings up a dialog box
+asking you to select a threshold. If the percentage identity between the
+aligned positions of any two sequences in the visible alignment exceeds
+this value, the shorter sequence is discarded.
Note: The redundancy
+calculation is done when the dialog box is opened. For large numbers
+of sequences this can take a long time as all pairs have to be compared.
+
+
+