X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=350be1c5fa00bad5f072d725ef2719a04c22a516;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=1f3d4641d46c99e879afbce028f4e3c536af88bf;hpb=3396e9f33cf3a16a7f38f5163cd057df4b859e7e;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 1f3d464..350be1c 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,11 +1,40 @@ - -Removing Redundancy - -

Removing redundancy

-

Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.

- - + + + +Removing Redundancy + + +

+ Removing redundancy +

+

+ Selecting the option in the Alignment window's Edit + menu or pressing 'CONTROL+D' brings up a dialog box + asking you to select a threshold. If the percentage identity between + the aligned positions of any two sequences in the visible alignment + exceeds this value, the shorter sequence is discarded.
+ Note: The redundancy calculation is done when the dialog + box is opened. For large numbers of sequences this can take a long + time as all pairs have to be compared. +

+ +