X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=403535bf69da2d26a8673584cff76030906a87f8;hb=e8daf72014ae089f2abe2a4561ccc91f39f995ad;hp=0e07e654475354faaf25c9787ff7c3c16843e513;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git
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-
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-tree
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+
+
+
+Removing Redundancy
+
+
+Removing redundancy
+Selecting the option in the Alignment window's Edit
+menu or pressing 'CONTROL+D' brings up a dialog box
+asking you to select a threshold. If the percentage identity between the
+aligned positions of any two sequences in the visible alignment exceeds
+this value, the shorter sequence is discarded.
Note: The redundancy
+calculation is done when the dialog box is opened. For large numbers
+of sequences this can take a long time as all pairs have to be compared.
+
+
+