X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=4b42238e872ec89f0b87963f251aa6e94dcafff9;hb=4de388d1d73eb67fe9ccbfeb5f3483a0fe3052e8;hp=0e07e654475354faaf25c9787ff7c3c16843e513;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 0e07e65..4b42238 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,5 +1,16 @@ - -
-tree - - + + +Removing redundancy
+Selecting the option in the Alignment window's Edit
+menu or pressing 'CONTROL+D' brings up a dialog box
+asking you to select a threshold. If the percentage identity between the
+aligned positions of any two sequences in the visible alignment exceeds
+this value, the shorter sequence is discarded.
Note: The redundancy
+calculation is done when the dialog box is opened. For large numbers
+of sequences this can take a long time as all pairs have to be compared.
+