X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=5b1badb3629a325744833a6934fb83e0cbb8e53e;hb=88141010d441b5fa5fcf43bb3dcbecbbc1721139;hp=686b1df701ea58e4463de8861fb1179c317c1b5a;hpb=1693646e78fb0dddebcd94f8bef7e2acd3bdaae0;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 686b1df..5b1badb 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,10 +1,40 @@ - -
-Removing redundancy
-Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.
- - + + + ++ Removing redundancy +
+
+ Selecting the option in the Alignment window's Edit
+ menu or pressing 'CONTROL+D' brings up a dialog box
+ asking you to select a threshold. If the percentage identity between
+ the aligned positions of any two sequences in the visible alignment
+ exceeds this value, the shorter sequence is discarded.
Note:
+ The redundancy calculation is done when the dialog box is opened.
+ For large numbers of sequences this can take a long time as all
+ pairs have to be compared.
+