X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=5b1badb3629a325744833a6934fb83e0cbb8e53e;hb=refs%2Fheads%2Ffeatures%2FJAL-2754findFeaturesByColumn;hp=254ae53d080d9f5f8a4bb05397bce55ea1a65e8f;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 254ae53..5b1badb 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -23,14 +23,18 @@ Removing Redundancy -

Removing redundancy

-

Selecting the option in the Alignment window's Edit -menu or pressing 'CONTROL+D' brings up a dialog box -asking you to select a threshold. If the percentage identity between the -aligned positions of any two sequences in the visible alignment exceeds -this value, the shorter sequence is discarded.
Note: The redundancy -calculation is done when the dialog box is opened. For large numbers -of sequences this can take a long time as all pairs have to be compared. -

+

+ Removing redundancy +

+

+ Selecting the option in the Alignment window's Edit + menu or pressing 'CONTROL+D' brings up a dialog box + asking you to select a threshold. If the percentage identity between + the aligned positions of any two sequences in the visible alignment + exceeds this value, the shorter sequence is discarded.
Note: + The redundancy calculation is done when the dialog box is opened. + For large numbers of sequences this can take a long time as all + pairs have to be compared. +