X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=94cbc654d5bd33382c67308396d3732066dc1f51;hb=ac4f3dfaa8d22b7b2eb164cceb354d029c07b0ad;hp=f2227698a94c82a5f34799ec0c6638ada298bca7;hpb=a8f483d04205bb8273ee311c12968b7e86d205fa;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index f222769..94cbc65 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,34 +1,40 @@ + --> Removing Redundancy -

Removing redundancy

-

Selecting the option in the Alignment window's Edit -menu or pressing 'CONTROL+D' brings up a dialog box -asking you to select a threshold. If the percentage identity between the -aligned positions of any two sequences in the visible alignment exceeds -this value, the shorter sequence is discarded.
Note: The redundancy -calculation is done when the dialog box is opened. For large numbers -of sequences this can take a long time as all pairs have to be compared. -

+

+ Removing redundancy +

+

+ Selecting the option in the Alignment window's Edit + menu or pressing 'CONTROL+D' brings up a dialog box + asking you to select a threshold. If the percentage identity between + the aligned positions of any two sequences in the visible alignment + exceeds this value, the shorter sequence is discarded.
+ Note: The redundancy calculation is done when the dialog + box is opened. For large numbers of sequences this can take a long + time as all pairs have to be compared. +