X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=c8d4ef6396f1bc5ae2179c5f928d1834d916b5df;hb=dbd9a22891bded630623f94d78eee8a39f387051;hp=4b8fe7b3b39de24e4ce42d741e652c6cddcba4c2;hpb=0696cffbccbb537be78d9fc2410589adbcd7be35;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 4b8fe7b..c8d4ef6 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,33 +1,40 @@ + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + --> Removing Redundancy -

Removing redundancy

-

Selecting the option in the Alignment window's Edit -menu or pressing 'CONTROL+D' brings up a dialog box -asking you to select a threshold. If the percentage identity between the -aligned positions of any two sequences in the visible alignment exceeds -this value, the shorter sequence is discarded.
Note: The redundancy -calculation is done when the dialog box is opened. For large numbers -of sequences this can take a long time as all pairs have to be compared. -

+

+ Removing redundancy +

+

+ Selecting the option in the Alignment window's Edit + menu or pressing 'CONTROL+D' brings up a dialog box + asking you to select a threshold. If the percentage identity between + the aligned positions of any two sequences in the visible alignment + exceeds this value, the shorter sequence is discarded.
+ Note: The redundancy calculation is done when the dialog + box is opened. For large numbers of sequences this can take a long + time as all pairs have to be compared. +