X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=ccc8457d5fbd8e698df2c8e2c16bd95c20ede752;hb=1a703959b2bfba03cf8117466f8f98f9aba1e77c;hp=1f3d4641d46c99e879afbce028f4e3c536af88bf;hpb=3396e9f33cf3a16a7f38f5163cd057df4b859e7e;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 1f3d464..ccc8457 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,11 +1,36 @@ - -Removing Redundancy - -

Removing redundancy

-

Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.

- - + + + +Removing Redundancy + + +

Removing redundancy

+

Selecting the option in the Alignment window's Edit +menu or pressing 'CONTROL+D' brings up a dialog box +asking you to select a threshold. If the percentage identity between the +aligned positions of any two sequences in the visible alignment exceeds +this value, the shorter sequence is discarded.
Note: The redundancy +calculation is done when the dialog box is opened. For large numbers +of sequences this can take a long time as all pairs have to be compared. +

+ +