X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=ccc8457d5fbd8e698df2c8e2c16bd95c20ede752;hb=b0c310ec55943ba114a00ee581f6430d8dc945c7;hp=686b1df701ea58e4463de8861fb1179c317c1b5a;hpb=1693646e78fb0dddebcd94f8bef7e2acd3bdaae0;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 686b1df..ccc8457 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,10 +1,36 @@ - - -

Removing redundancy

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Selecting this option brings up a window asking you to select a threshold. - If the percentage identity between two sequences exceeds this value one of the - sequences (the shorter) is discarded. The redundancy calculation is done when - the Apply button is pressed. For large numbers of sequences this can take a - long time as all pairs have to be compared.

- - + + + +Removing Redundancy + + +

Removing redundancy

+

Selecting the option in the Alignment window's Edit +menu or pressing 'CONTROL+D' brings up a dialog box +asking you to select a threshold. If the percentage identity between the +aligned positions of any two sequences in the visible alignment exceeds +this value, the shorter sequence is discarded.
Note: The redundancy +calculation is done when the dialog box is opened. For large numbers +of sequences this can take a long time as all pairs have to be compared. +

+ +