X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fredundancy.html;h=ccc8457d5fbd8e698df2c8e2c16bd95c20ede752;hb=c0aaf84826ff25d510846bd1099e10809c4df711;hp=0e07e654475354faaf25c9787ff7c3c16843e513;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/calculations/redundancy.html b/help/html/calculations/redundancy.html index 0e07e65..ccc8457 100755 --- a/help/html/calculations/redundancy.html +++ b/help/html/calculations/redundancy.html @@ -1,5 +1,36 @@ - - -tree - - + + + +Removing Redundancy + + +

Removing redundancy

+

Selecting the option in the Alignment window's Edit +menu or pressing 'CONTROL+D' brings up a dialog box +asking you to select a threshold. If the percentage identity between the +aligned positions of any two sequences in the visible alignment exceeds +this value, the shorter sequence is discarded.
Note: The redundancy +calculation is done when the dialog box is opened. For large numbers +of sequences this can take a long time as all pairs have to be compared. +

+ +