X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fscorematrices.html;h=5fbbc194f2dde467cf88aad0e748c9d188dd40c7;hb=2b764dbf2bd3173995553ac4795fa9c5fdef6058;hp=5fb900fa9a85c271138e85846ad97be5bfd7cf16;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git
diff --git a/help/html/calculations/scorematrices.html b/help/html/calculations/scorematrices.html
index 5fb900f..5fbbc19 100644
--- a/help/html/calculations/scorematrices.html
+++ b/help/html/calculations/scorematrices.html
@@ -33,7 +33,8 @@
matrix, and (since 2.8.1) is available for Tree and PCA
calculations.
Simple Nucleotide
- Substition is a (fairly) arbitrary DNA/RNA substitution matrix.
+ Substitution is a (fairly) arbitrary DNA/RNA substitution
+ matrix.
@@ -721,9 +722,10 @@
PAM250
Percentage
Accepted Mutation matrix. PAM250
estimates substitutions after 250% of sites have changed (each
- site can be mutated multple times).
Jalview 2.8.1 introduced
- support for PAM250 based PCA
- and tree calculations.
+ site can be mutated multple times).
Jalview 2.8.1
+ introduced support for PAM250 based PCA and tree calculations.
This nucleotide matrix was introduced in
Jalview 2.8. If you'd like to improve it - please take a look at Issue JAL-1027 - introduce a nucleotide substitution matrix that
+ href="http://issues.jalview.org/browse/JAL-1027">Issue
+ JAL-1027 - introduce a nucleotide substitution matrix that
supports RNA/DNA and ambiguity codes