This menu appears if the alignment contains any sequence associated alignment annotation with associated - score values. Each entry is the label for a distinct group of - sequence associated annotation scores which can be used for - sorting. + href="../features/annotationsFormat.html">sequence + associated alignment annotation with associated score values. + Each entry is the label for a distinct group of sequence + associated annotation scores which can be used for sorting.
+ Sorting according to sequence features
+ Additional sort operations for alignments containing sequence
+ features are provided in the Feature
+ Settings dialog, opened via View→Feature
+ Settings...
+
Reversing the Order
Selecting any item from the Sort menu will sort sequences in an ascending order according to the property defining the sort. If the same sort is re-applied, the sequences will be sorted in the inverse - order. In the case of trees and alignment orderings, Jalview will - remember your last choice for sorting the alignment and only apply - the inverse ordering if you select the same tree or alignment - ordering item again.
+ order. In both cases, for sequences which are equivalent under the + sort operation, their order will be preserved (since version 2.10). + In the case of trees and alignment orderings, Jalview will remember + your last choice for sorting the alignment and only apply the + inverse ordering if you select the same tree or alignment ordering + item again.