X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fsorting.html;h=d7cb9d147860f1ce19c0cd5b324435b5f5b2bb4a;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=47522ee99232968a56f06df3cee581f0e29c0593;hpb=097286cf1aaa3767be06a2c99947265bc3417417;p=jalview.git
diff --git a/help/html/calculations/sorting.html b/help/html/calculations/sorting.html
index 47522ee..d7cb9d1 100755
--- a/help/html/calculations/sorting.html
+++ b/help/html/calculations/sorting.html
@@ -1,4 +1,21 @@
+
Sorting Sequences
@@ -34,8 +51,13 @@ alignments by some measure of sequence identity.
If the current alignment has been generated by one of Jalview's
alignment web services, the alignment ordering can be recovered by
its corresponding entry in the Sort menu.
-
+
+Sort by Score
+This menu appears if the alignment contains any sequence associated
+alignment annotation with associated score values. Each entry is the
+label for a distinct group of sequence associated annotation
+scores which can be used for sorting.
Reversing the Order
Selecting any item from the Sort menu will sort sequences in an