X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Fstructureconsensus.html;h=fd47dc0e4dec1abe1860b911f835ebec7c7e443f;hb=480d7b96f089281a3caf77d2a4e5adec09dc5bfa;hp=c194a53b2dbedede99657dbf12cb94be42b53f79;hpb=35738b40f315d0f619116f4e0b23e9a8ebf141d2;p=jalview.git

diff --git a/help/html/calculations/structureconsensus.html b/help/html/calculations/structureconsensus.html
index c194a53..fd47dc0 100755
--- a/help/html/calculations/structureconsensus.html
+++ b/help/html/calculations/structureconsensus.html
@@ -27,12 +27,13 @@
     <strong>Alignment RNA Structure Consensus Annotation</strong>
   </p>
 
-  <p>The RNA structure consensus displayed below the alignment gives the
-    percentage of valid base pairs per column for the first secondary
-    structure annotation shown on the annotation panel. These values are
-    shown as a histogram labeled &quot;StrucConsensus&quot;, where a
-    symbol below each bar indicates whether the majority of base pairs
-    are:<ul>
+  <p>The RNA structure consensus displayed below the alignment gives
+    the percentage of valid base pairs per column for the first
+    secondary structure annotation shown on the annotation panel. These
+    values are shown as a histogram labeled &quot;StrucConsensus&quot;,
+    where a symbol below each bar indicates whether the majority of base
+    pairs are:
+  <ul>
     <li>'(' - Watson-Crick (C:G, A:U/T)</li>
     <li>'[' - Non-canonical (a.ka. wobble) (G:U/T)</li>
     <li>'{' - Invalid (a.k.a. tertiary) (the rest)</li>
@@ -40,12 +41,11 @@
   <p>Mousing over the column gives the fraction of pairs classified
     as Watson-Crick, Canonical or Invalid.</p>
 
-  <p>By default
-    this calculation includes gaps in columns. You can choose to ignore
-    gaps in the calculation by right clicking on the label
-    &quot;StrucConsensus&quot; to the left of the structure consensus bar
-    chart.<br>
-  
+  <p>
+    By default this calculation includes gaps in columns. You can choose
+    to ignore gaps in the calculation by right clicking on the label
+    &quot;StrucConsensus&quot; to the left of the structure consensus
+    bar chart.<br>
   <p>
     <strong>RNA Structure logo</strong><br /> Right-clicking on the
     label allows you to enable the structure logo. It is very similar to