X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Ftreeviewer.html;h=638ed3c3a5d96d614f92fad055d5d66d01b821a6;hb=c218877a5572ea819f2a521e2205351d7b67bc93;hp=435b3b76f5597aa8d0333bc909809fe8b59149b8;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html
index 435b3b7..638ed3c 100755
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -15,7 +15,7 @@
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
---!>
+-->
 <head>
 <title>The Tree Viewing Window</title>
 </head>
@@ -76,8 +76,8 @@ the tree. Tree imported from outside may also contain bootstrap information,
 and additional leaves from sequences not present in the associated
 alignment.
 </p>
-<p>The view menu contains options controlling the way a tree is
-rendered and labelled:
+<p>The view menu mostly contains options controlling the way a tree is
+rendered and labeled:
 <ul>
 <li><strong>Fit to Window</strong><p>
 The tree layout will be scaled to fit in the  display
@@ -99,12 +99,19 @@ Toggles the display of a '*' at the beginning of a leaf label to
 indicate that there is no sequence corresponding to that leaf in the
 associated alignment.
 </p></li>
-<li><strong>Associate Leaves with ...</strong><p>
-Only visible when there are <a href="../features/multipleviews.html">multiple views</a> of the same
-alignment to show and edit which alignment views are associated with
-the leaves of the displayed tree.
-</p>
-</ul>
+		<li><strong>Sort Alignment By Tree</strong>
+		<p>
+				Sorts any associated alignment views using the current tree. (<em>Only
+					available in the Jalview Desktop</em>)
+			</p>
+		</li>
+		<li><strong>Associate Leaves with ...</strong>
+		<p>
+				Only visible when there are <a href="../features/multipleviews.html">multiple
+					views</a> of the same alignment to show and edit which alignment views
+				are associated with the leaves of the displayed tree.
+			</p>
+	</ul>
 </p>
 </body>
 </html>
