X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Ftreeviewer.html;h=7ad4f1d413772407baa5f7894b5f008f15690d3c;hb=25687914d19af3fc0057e9465a29d2dc6a94f27a;hp=67a92c4307bee09c3fecb89f53a6115b61cf84ea;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html
index 67a92c4..7ad4f1d 100755
--- a/help/html/calculations/treeviewer.html
+++ b/help/html/calculations/treeviewer.html
@@ -1,21 +1,24 @@
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
The Tree Viewing Window
@@ -76,8 +79,8 @@ the tree. Tree imported from outside may also contain bootstrap information,
and additional leaves from sequences not present in the associated
alignment.
-The view menu contains options controlling the way a tree is
-rendered and labelled:
+
The view menu mostly contains options controlling the way a tree is
+rendered and labeled:
- Fit to Window
The tree layout will be scaled to fit in the display
@@ -99,12 +102,19 @@ Toggles the display of a '*' at the beginning of a leaf label to
indicate that there is no sequence corresponding to that leaf in the
associated alignment.
-- Associate Leaves with ...
-Only visible when there are multiple views of the same
-alignment to show and edit which alignment views are associated with
-the leaves of the displayed tree.
-
-
+ Sort Alignment By Tree
+
+ Sorts any associated alignment views using the current tree. (Only
+ available in the Jalview Desktop)
+
+
+ Associate Leaves with ...
+
+ Only visible when there are multiple
+ views of the same alignment to show and edit which alignment views
+ are associated with the leaves of the displayed tree.
+
+