X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2Fcalculations%2Ftreeviewer.html;h=f05572c9564775069a5eb8d3f1431f3be5edbdbb;hb=3b20f512421e707431c326189dbf7d8755968baa;hp=bc467710b07ffef72ad518c92895ee3da06f5c6b;hpb=8316c5a64282537b69e36040814d2b0a81e7a438;p=jalview.git diff --git a/help/html/calculations/treeviewer.html b/help/html/calculations/treeviewer.html index bc46771..f05572c 100755 --- a/help/html/calculations/treeviewer.html +++ b/help/html/calculations/treeviewer.html @@ -16,9 +16,15 @@ are also reflected in any other analysis windows associated with the alignment, such as another tree viewer.
-- Clicking on an internal node of the tree will rearrange the tree - diagram, inverting the ordering of the branches at that node. +
Moving the mouse over an internal node of the tree will highlight + it. You can then :
Clicking anywhere along the extent of the tree (but not on a leaf or @@ -47,12 +53,12 @@ retrieved with the 'Input Data...' entry. associated with a tree. Trees calculated by Jalview have branch lengths, which correspond to the distance measure used to construct the tree. Tree imported from outside may also contain bootstrap information, -or additional leaves from sequences not present in the associated +and additional leaves from sequences not present in the associated alignment.
The view menu contains options controlling the way a tree is -rendered and labelled:
-The tree layout will be scaled to fit in the display window. You may need to reduce the font size to minimise the leaf @@ -70,8 +76,14 @@ Labels each branch or leaf with its associated bootstrap value.
Toggles the display of a '*' at the beginning of a leaf label to -indicate that there is no sequence corresponding to that leaf in the associated alignment. +indicate that there is no sequence corresponding to that leaf in the +associated alignment.
+Only visible when there are multiple views of the same +alignment to show and edit which alignment views are associated with +the leaves of the displayed tree. +