X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2FabovePID.html;h=8adacc9ab34d32083239fde7c76fa32525cc56a4;hb=b1e2aea95b3839a1a53f809c579666075cd3d348;hp=614764b692423216da14575c94c5726d406d78da;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git diff --git a/help/html/colourSchemes/abovePID.html b/help/html/colourSchemes/abovePID.html index 614764b..8adacc9 100755 --- a/help/html/colourSchemes/abovePID.html +++ b/help/html/colourSchemes/abovePID.html @@ -35,10 +35,10 @@ td { Colouring above a percentage identity threshold
Selecting this option causes the colour scheme to be applied to - only those residues that occur in that column more than a certain - percentage of the time. For instance selecting the threshold to be - 100 will only colour those columns with 100 % identity. This - threshold option can be applied to the Zappo, Taylor, Hydrophobicity - and User colour schemes.
+ only those residues that occur in that column at least a certain + percentage of the time. For instance, selecting the threshold to be + 100 will only colour those columns with 100% identity, and selecting 50 will shade residues appearing in least 50% of the rows (or sequences) in each column. +The percentage calculation may include or exclude gaps in the column, depending on the option selected for the consensus calculation.
+With a threshold of 0, colouring is unchanged.