X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2FannotationColouring.html;h=2272503c682ac2f026766eea21a970f952d4cd32;hb=281aa090976818b388374b7aae780a29a8864b96;hp=30b63960b6ab3cea715744183421e42447f7e867;hpb=c17661b22323a66090ea91e04751aa17461b17c5;p=jalview.git
diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html
index 30b6396..2272503 100755
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -39,14 +39,17 @@
- Select which annotation to base the colouring scheme on
- using the top left selection box.
If the Per-sequence
- only tick box is not greyed out, then ticking it will limit the
- available annotation rows to just those that are sequence
- associated (e.g. T-COFFEE scores and protein disorder predictions), which will colour each sequence
- according to its own per-residue scores.
Per-sequence
- associated annotation colouring was introduced in Jalview 2.8
+ using the top left selection box. Sequence associated alignment
+ annotation are shown with the seuqence's name appended.
If
+ the Per-sequence only tick box is not greyed out,
+ then ticking it will limit the list of available annotation rows
+ to just the labels for those that are sequence associated.
+ Annotation rows on each sequence with the same label (e.g.
+ T-COFFEE scores and protein
+ disorder predictions) will then be used to colour its
+ corresponding positions in the alignment.
Per-sequence
+ associated annotation colouring is currently only available in
+ the Desktop.
- If the "Use Original Colours" box is selected,
the colouring scheme will use the colouring scheme present on the
@@ -74,9 +77,9 @@
- Press the "Defaults" button to reset the
minimum and maximum colours to their default settings (these
are configured in the applet's parameters or the application's user preferences.).
Default min
- and max colours were introduced in Jalview 2.7
+ href="../features/preferences.html">application's
+ user preferences.).
Default min and max
+ colours were introduced in Jalview 2.7