X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2FannotationColouring.html;h=e891a9f8ace0caf05f23ac47a869dc54dace67da;hb=d423f22792e47dbc800ae220a58677f988971d06;hp=ec01fa9687cab13e1dde3e4b1e723219875c1820;hpb=797d4400e51c5786c080d7d746d5968589b5dc78;p=jalview.git
diff --git a/help/html/colourSchemes/annotationColouring.html b/help/html/colourSchemes/annotationColouring.html
index ec01fa9..e891a9f 100755
--- a/help/html/colourSchemes/annotationColouring.html
+++ b/help/html/colourSchemes/annotationColouring.html
@@ -1,30 +1,46 @@
-
-
-
Annotation Colouring
-
-
- Annotation Colouring
-Jalview 2.08 allows an alignment to be coloured on a per-column basis based
- on any numerical annotation added to that alignment.
-Select "Colour" → "..
- by Annotation" to bring up the Colour by Annotation settings window.
-
-
-
- - Select which annotation to base the colouring scheme on using the top left
- selection box.
- - If the "Use Original Colours" box is selected, the colouring
- scheme will use the colouring scheme present on the alignment before the Annotation
- Colour Settings window was displayed.
- - The colour scheme can display a colour gradient from a colour representing
- the minimum value in the selected annotation to a colour representing the
- maximum value in the selected annotation. Use the "Min Colour" and
- "Max Colour" to set the colour gradient range.
- - Select whether to colour the alignment above or below an adjustable threshold
- with the selection box center left of the window.
- - Change the threshold value with the slider, or enter the exact value in
- the text box.
-
-
-
-
+
+
+Annotation Colouring
+
+
+ Annotation Colouring
+Jalview 2.08 allows an alignment to be coloured on a per-column basis based
+ on any numerical annotation added to that alignment.
+Select "Colour" → "..
+ by Annotation" to bring up the Colour by Annotation settings window.
+
+
+
+ - Select which annotation to base the colouring scheme on using the top left
+ selection box.
+ - If the "Use Original Colours" box is selected, the colouring
+ scheme will use the colouring scheme present on the alignment before the Annotation
+ Colour Settings window was displayed.
+ - The colour scheme can display a colour gradient from a colour representing
+ the minimum value in the selected annotation to a colour representing the
+ maximum value in the selected annotation. Use the "Min Colour" and
+ "Max Colour" to set the colour gradient range.
+ - Select whether to colour the alignment above or below an adjustable threshold
+ with the selection box center left of the window.
+ - Change the threshold value with the slider, or enter the exact value in
+ the text box.
+
+
+
+