X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fclustal.html;h=0c39a15ba045ccba34e03db9fa646fad4fe95528;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=488f7451f6714eb5196ddeeaaeb85f6ef344403a;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html index 488f745..0c39a15 100755 --- a/help/html/colourSchemes/clustal.html +++ b/help/html/colourSchemes/clustal.html @@ -1,52 +1,125 @@ - -
- - - - -Clustal X
-N | -G | -P | -B | -D | -
S | -C | -Y | -K | -X | -
Q | -W | -T | -R | -H | -
Z | -E | -A | -F | -M | -
L | -V | -I | -
+ Clustal X Colour Scheme +
+This is an emulation of the default colourscheme used for + alignments in Clustal X, a graphical interface for the ClustalW + multiple sequence alignment program. Each residue in the alignment + is assigned a colour if the amino acid profile of the alignment at + that position meets some minimum criteria specific for the residue + type.
+The table below gives these criteria as clauses: {+X%,xx,y}, + where X is the minimum percentage presence for any of the xx (or y) + residue types.
++
Clustal X Default Colouring | +|||||||||||||||||||||||||||||||||||||||
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