X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fclustal.html;h=0c39a15ba045ccba34e03db9fa646fad4fe95528;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=dd436c8d94ed52e9158da14ce01ab388e698edbc;hpb=51b6a83c3eb462f1a0cb76a8b4111521a4554fac;p=jalview.git diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html index dd436c8..0c39a15 100755 --- a/help/html/colourSchemes/clustal.html +++ b/help/html/colourSchemes/clustal.html @@ -1,45 +1,125 @@ - -
Clustal X Colour Scheme
-This is an emulation of the default colourscheme used for alignments in - Clustal X, a graphical interface for the ClustalW multiple sequence alignment - program. Each residue in the alignment is assigned a colour if the - amino acid profile of the alignment at that position - meets some minimum criteria specific for the residue type.
-The table below gives these criteria as clauses: {+X%,xx,y}, - where X is the minimum percentage presence for any of the xx (or y) residue types.
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+ Clustal X Colour Scheme +
+This is an emulation of the default colourscheme used for + alignments in Clustal X, a graphical interface for the ClustalW + multiple sequence alignment program. Each residue in the alignment + is assigned a colour if the amino acid profile of the alignment at + that position meets some minimum criteria specific for the residue + type.
+The table below gives these criteria as clauses: {+X%,xx,y}, + where X is the minimum percentage presence for any of the xx (or y) + residue types.
++
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