X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fclustal.html;h=195171eecde4d5db845e10244dde9cadde2e2a67;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=dd436c8d94ed52e9158da14ce01ab388e698edbc;hpb=51b6a83c3eb462f1a0cb76a8b4111521a4554fac;p=jalview.git diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html index dd436c8..195171e 100755 --- a/help/html/colourSchemes/clustal.html +++ b/help/html/colourSchemes/clustal.html @@ -1,28 +1,48 @@ - -
Clustal X Colour Scheme
+ + +Clustal X Colour Scheme
This is an emulation of the default colourscheme used for alignments in - Clustal X, a graphical interface for the ClustalW multiple sequence alignment + Clustal X, a graphical interface for the ClustalW multiple sequence alignment program. Each residue in the alignment is assigned a colour if the amino acid profile of the alignment at that position meets some minimum criteria specific for the residue type.
The table below gives these criteria as clauses: {+X%,xx,y}, - where X is the minimum percentage presence for any of the xx (or y) residue types.
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Clustal X Default Colouring | |||||||||||||||||||
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