X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fclustal.html;h=eab7cfc2cc7b8739a0e3b8523cc63ae80f55a553;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=d97decab92d96695367006b8e401136104d237aa;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git diff --git a/help/html/colourSchemes/clustal.html b/help/html/colourSchemes/clustal.html index d97deca..eab7cfc 100755 --- a/help/html/colourSchemes/clustal.html +++ b/help/html/colourSchemes/clustal.html @@ -1,55 +1,125 @@ +
+Clustal X Colour Scheme
-This is an emulation of the default colourscheme used for alignments in - Clustal X, a graphical interface for the ClustalW multiple sequence alignment - program. Each residue in the alignment is assigned a colour if the - amino acid profile of the alignment at that position - meets some minimum criteria specific for the residue type.
-The table below gives these criteria as clauses: {+X%,xx,y}, - where X is the minimum percentage presence for any of the xx (or y) residue types.
-
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+ Clustal X Colour Scheme +
+This is an emulation of the default colourscheme used for + alignments in Clustal X, a graphical interface for the ClustalW + multiple sequence alignment program. Each residue in the alignment + is assigned a colour if the amino acid profile of the alignment at + that position meets some minimum criteria specific for the residue + type.
+The table below gives these criteria as clauses: {+X%,xx,y}, + where X is the minimum percentage presence for any of the xx (or y) + residue types.
++
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