X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Findex.html;h=76641019721fd56fa8a639f7d6468a280012c2f2;hb=281aa090976818b388374b7aae780a29a8864b96;hp=7aecc233c3bd7fdabe231306b7c68beb5bc5a48a;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see
Colour schemes
-Jalview allows the user to set a background colour for the whole -alignment view or for each group defined on regions within it.
-To change the background colour, simply select the colour from -the "Colour" menu.
-To change the colour of a group, right click on any residue -within a group and use the popup menu to define the group colour.
-At the top of the "Colour" menu the tick box -"Apply Background Colour to all groups". This is ticked by -default so that a chosen colour scheme will be applied to all existing -groups. If you wish to maintain the colour scheme for defined groups, -make sure you deselect this option before changing the background -colour.
-The "Colour→Colour Text..." entry -opens a dialog box to set a different text colour for light and dark -background, and the intensity threshold for transition between them.
-The default colour schemes are summarised in the table below: -
-
-
|
-
+
+ Colour schemes +
+Jalview allows the user to set a background colour for the + whole alignment view or for each group defined on regions within it.
+To change the background colour, simply select the colour from + the "Colour" menu.
+To change the colour of a group, right click on any residue + within a group and use the popup menu to define the group colour.
+At the top of the "Colour" menu the tick box + "Apply Background Colour to all groups". This is ticked by + default so that a chosen colour scheme will be applied to all + existing groups. If you wish to maintain the colour scheme for + defined groups, make sure you deselect this option before changing + the background colour.
++ The "Colour→Colour Text..." + entry opens a dialog box to set a different text colour for light + and dark background, and the intensity threshold for transition + between them. +
+The default colour schemes are summarised in the table below: +
+
+ Protein Colour Schemes +
+
+
|
+
+
+ Nucleotide Colour Schemes +
+
+
|
+