Colour Schemes

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Findex.html;h=8eed0f7ec6bd07b72f92c25da3e77f22637c0b7f;hb=713db61b4724485414159cfc145f9ffa4a24bb6d;hp=e5a9299d474b7151358bb250f19808ffe6a69e0b;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html index e5a9299..8eed0f7 100755 --- a/help/html/colourSchemes/index.html +++ b/help/html/colourSchemes/index.html @@ -1,5 +1,16 @@ - + +Colour Schemes + +

Colour schemes

Jalview allows the user to set a background colour for the whole alignment @@ -8,14 +19,254 @@ menu.

To change the colour of a group, right click on any residue within a group and use the popup menu to define the group colour.

At the top of the "Colour" menu the tick box "Apply Background - Colour to all groups". This is automatically ticked as default and means - the chosen colour will be applied to all existing groups. If you wish to maintain - the colour scheme for defined groups, make sure you deselect this option before +

At the top of the "Colour" menu the tick box "Apply Background + Colour to all groups". This is automatically ticked as default and means + the chosen colour will be applied to all existing groups. If you wish to maintain + the colour scheme for defined groups, make sure you deselect this option before changing the background colour.

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +

Clustal

Zappo

Taylor

Hydrophobicity

Helix Propensity

Strand Propensity

Turn Propensity

Buried Index