Colour Schemes

X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Findex.html;h=8eed0f7ec6bd07b72f92c25da3e77f22637c0b7f;hb=91cb798a47b512b0ac3792fd3a84f2c5bd3c7218;hp=e2d44a3cc68bb41552b9dd33a1a51ecc00c983e7;hpb=3396e9f33cf3a16a7f38f5163cd057df4b859e7e;p=jalview.git diff --git a/help/html/colourSchemes/index.html b/help/html/colourSchemes/index.html index e2d44a3..8eed0f7 100755 --- a/help/html/colourSchemes/index.html +++ b/help/html/colourSchemes/index.html @@ -1,5 +1,16 @@ -Colour Schemes + +Colour Schemes + +

Colour schemes

Jalview allows the user to set a background colour for the whole alignment @@ -8,14 +19,254 @@ menu.

To change the colour of a group, right click on any residue within a group and use the popup menu to define the group colour.

At the top of the "Colour" menu the tick box "Apply Background - Colour to all groups". This is automatically ticked as default and means - the chosen colour will be applied to all existing groups. If you wish to maintain - the colour scheme for defined groups, make sure you deselect this option before +

At the top of the "Colour" menu the tick box "Apply Background + Colour to all groups". This is automatically ticked as default and means + the chosen colour will be applied to all existing groups. If you wish to maintain + the colour scheme for defined groups, make sure you deselect this option before changing the background colour.

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Clustal

Zappo

Taylor

Hydrophobicity

Helix Propensity

Strand Propensity

Turn Propensity

Buried Index