X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=344f0179a4c9c82dafec3fb230d2ef14ca07332c;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=2021a646132d652129325b820659c7fd765e1138;hpb=6fa9683bef52d6709abb81840681e4fa452cafe7;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index 2021a64..344f017 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -1,11 +1,63 @@ - - - -

User Defined Colours

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Each of the residues may be assigned a new user defined colour.

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You may save this colour scheme and reuse it at a later time.

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The default user defined colour is the last user colour scheme which was defined.

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- - + + + +User Defined Colours + + +

+ User Defined Colours +

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+ You may define any number of new colour schemes, each with a unique + name.

Each of the residues in a colour scheme + may be assigned any chosen colour.
Select one or more + residues, then select the desired colour.
Use Ctrl-click to + select multiple residues, or click then Shift-click to select a + block.
Note that the currently selected buttons are + highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose + distinct colours for upper and lower case residue codes. +

+ Click Apply or OK to set your new + colours on the active alignment window.
Click Cancel + to undo your changes if you pressed the Apply + button. +

+ If you save your colour scheme with a unique name, the colour scheme + name will be added to the + Colour menu on each new alignment window. +
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Any saved colour schemes will be automatically loaded the + next time you use Jalview. +
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+ Note: the screenshot shows the appearance when running Java + version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour + chooser is currently supported (for reasons of available screen + space). +

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