X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=3d41a756679d08dadd5f4db4b8046ce5f3d92317;hb=ab43013b7e357b84b4abade0dba949668dfb2a0e;hp=cf841a9dad4a2b78e9fd464a0d8b61bccf8effd6;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index cf841a9..3d41a75 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -1,40 +1,51 @@ + --> User Defined Colours -

User Defined Colours

-

+

User Defined Colours

+

You may define any number of new colour schemes, each with a unique name.

- Each of the residues in a new colour scheme may be assigned a new user defined - colour.
-
- Click "Apply" or "OK" to set your new colours on the active - alignment window.

-

Click "Cancel" to undo your changes if you pressed the "Apply" - button.
-
- If you save your colour scheme with a unique name the colour scheme name will - be added to the "Colour" menu on each new alignment window.
+ Each of the residues in a colour scheme may be assigned any chosen colour.
+ Select one or more residues, then select the desired colour.
+ Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
+ Note that the currently selected buttons are highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose distinct colours for upper and + lower case residue codes. +

+ Click Apply or OK to set your new colours on the active + alignment window.
+ Click Cancel to undo your changes if you pressed the Apply + button. +

+ If you save your colour scheme with a unique name, the colour scheme name will + be added to the Colour menu on each new alignment window.

Any saved colour schemes will be automatically loaded the next time you use - Jalview.

+ Jalview. +

+ Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is + currently supported (for reasons of available screen space). +