X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=5eacca90c620d9c7f1786a578153955931622b4e;hb=5720f2cea034f014f366886b3cb9a170a909e988;hp=e18e273bc6e63d17a8266460e4a4915b193850f3;hpb=6ab4ef1cc71ff9d28a21a139db69e4a8351a3fb5;p=jalview.git
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html
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+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+User Defined Colours
+
+User Defined Colours
+
+You may define any number of new colour schemes, each with a unique name.
+
+ Each of the residues in a colour scheme may be assigned any chosen colour.
+ Select one or more residues, then select the desired colour.
+ Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
+ Note that the currently selected buttons are highlighted by a lighter text colour.
+
+ The Case Sensitive option allows you to choose distinct colours for upper and
+ lower case residue codes.
+
+ Click Apply or OK to set your new colours on the active
+ alignment window.
+ Click Cancel to undo your changes if you pressed the Apply
+ button.
+
+ If you save your colour scheme with a unique name, the colour scheme name will
+ be added to the Colour menu on each new alignment window.
+
+ Any saved colour schemes will be automatically loaded the next time you use
+ Jalview.
+
+ Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is
+ currently supported (for reasons of available screen space).
+
+
+