X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=8f98165ed74398ac6f576173ef7fc2ad79d1c857;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=066ea17d131b521da9a05f37cabb4578ccf600e4;hpb=c53aeee9a688f68d64106a968876e542f701fbc6;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index 066ea17..8f98165 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -1,39 +1,63 @@ -User Defined Colours + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + --> + +User Defined Colours + -

User Defined Colours

-

-

You may define any number of new colour schemes, each with a unique name.
-
- Each of the residues in a new colour scheme may be assigned a new user defined - colour.
+

+ User Defined Colours +

+

+ +

+

+ You may define any number of new colour schemes, each with a unique + name.

Each of the residues in a colour scheme + may be assigned any chosen colour.
Select one or more + residues, then select the desired colour.
Use Ctrl-click to + select multiple residues, or click then Shift-click to select a + block.
Note that the currently selected buttons are + highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose + distinct colours for upper and lower case residue codes. +

+ Click Apply or OK to set your new + colours on the active alignment window.
Click Cancel + to undo your changes if you pressed the Apply + button. +

+ If you save your colour scheme with a unique name, the colour scheme + name will be added to the + Colour menu on each new alignment window.
- Click "Apply" or "OK" to set your new colours on the active - alignment window.

-

Click "Cancel" to undo your changes if you pressed the "Apply" - button.
+
Any saved colour schemes will be automatically loaded the + next time you use Jalview.
- If you save your colour scheme with a unique name the colour scheme name will - be added to the "Colour" menu on each new alignment window.

- Any saved colour schemes will be automatically loaded the next time you use - Jalview.

+ Note: the screenshot shows the appearance when running Java + version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour + chooser is currently supported (for reasons of available screen + space). +