X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=8f98165ed74398ac6f576173ef7fc2ad79d1c857;hb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;hp=c09af642b88efb8814f99029392642d0b29cb4ba;hpb=59d682209891099d46b960509907c79e3fb276fe;p=jalview.git
diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html
index c09af64..8f98165 100755
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -1,39 +1,63 @@
-User Defined Colours
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ -->
+
+User Defined Colours
+
-User Defined Colours
-
-You may define any number of new colour schemes, each with a unique name.
+
+ User Defined Colours
+
+
+ 
+
+
+ You may define any number of new colour schemes, each with a unique
+ name.
Each of the residues in a colour scheme
+ may be assigned any chosen colour.
Select one or more
+ residues, then select the desired colour.
Use Ctrl-click to
+ select multiple residues, or click then Shift-click to select a
+ block.
Note that the currently selected buttons are
+ highlighted by a lighter text colour.
+
+ The Case Sensitive option allows you to choose
+ distinct colours for upper and lower case residue codes.
+
+ Click Apply or OK to set your new
+ colours on the active alignment window.
Click Cancel
+ to undo your changes if you pressed the Apply
+ button.
+
+ If you save your colour scheme with a unique name, the colour scheme
+ name will be added to the
+ Colour menu on each new alignment window.
- Each of the residues in a new colour scheme may be assigned a new user defined
- colour.
+
Any saved colour schemes will be automatically loaded the
+ next time you use Jalview.
- Click "Apply" or "OK" to set your new colours on the active
- alignment window.
-Click "Cancel" to undo your changes if you pressed the "Apply"
- button.
- If you save your colour scheme with a unique name the colour scheme name will
- be added to the "Colour" menu on each new alignment window.
-
- Any saved colour schemes will be automatically loaded the next time you use
- Jalview.
+ Note: the screenshot shows the appearance when running Java
+ version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour
+ chooser is currently supported (for reasons of available screen
+ space).
+