X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=c2fde1c7db35fe49d224f881055718b28314f375;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=344f0179a4c9c82dafec3fb230d2ef14ca07332c;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git

diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html
index 344f017..c2fde1c 100755
--- a/help/html/colourSchemes/user.html
+++ b/help/html/colourSchemes/user.html
@@ -1,7 +1,7 @@
 <html>
 <!--
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -27,7 +27,7 @@
     <strong>User Defined Colours</strong>
   </p>
   <p>
-    <img src="userDefined_java6.gif" width="815" height="402">
+    <img src="userDefined_java7.gif" width="815" height="402">
   </p>
   <p>
     You may define any number of new colour schemes, each with a unique
@@ -41,6 +41,9 @@
     The <strong>Case Sensitive</strong> option allows you to choose
     distinct colours for upper and lower case residue codes.
   <p>
+    The <strong>Colour All Lower Case	</strong> option allows you to apply a selected colour
+    to all lower case residues.
+  <p>
     Click <strong>Apply</strong> or <strong>OK</strong> to set your new
     colours on the active alignment window.<br /> Click <strong>Cancel</strong>
     to undo your changes if you pressed the <strong>Apply</strong>
@@ -53,11 +56,5 @@
   <br> Any saved colour schemes will be automatically loaded the
   next time you use Jalview.
   <br>
-  <br>
-  <em>Note: the screenshot shows the appearance when running Java
-    version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour
-    chooser is currently supported (for reasons of available screen
-    space).</em>
-  <p />
 </body>
 </html>
