X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=c2fde1c7db35fe49d224f881055718b28314f375;hb=136c0793b90b72b928c4d77dc109dd5c644e00d3;hp=cf841a9dad4a2b78e9fd464a0d8b61bccf8effd6;hpb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index cf841a9..c2fde1c 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -1,40 +1,60 @@ -User Defined Colours + --> + +User Defined Colours + -

User Defined Colours

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You may define any number of new colour schemes, each with a unique name.
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+ User Defined Colours +

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+ +

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+ You may define any number of new colour schemes, each with a unique + name.

Each of the residues in a colour scheme + may be assigned any chosen colour.
Select one or more + residues, then select the desired colour.
Use Ctrl-click to + select multiple residues, or click then Shift-click to select a + block.
Note that the currently selected buttons are + highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose + distinct colours for upper and lower case residue codes. +

+ The Colour All Lower Case option allows you to apply a selected colour + to all lower case residues. +

+ Click Apply or OK to set your new + colours on the active alignment window.
Click Cancel + to undo your changes if you pressed the Apply + button. +

+ If you save your colour scheme with a unique name, the colour scheme + name will be added to the + Colour menu on each new alignment window.
- Each of the residues in a new colour scheme may be assigned a new user defined - colour.
+
Any saved colour schemes will be automatically loaded the + next time you use Jalview.
- Click "Apply" or "OK" to set your new colours on the active - alignment window.

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Click "Cancel" to undo your changes if you pressed the "Apply" - button.
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- If you save your colour scheme with a unique name the colour scheme name will - be added to the "Colour" menu on each new alignment window.
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- Any saved colour schemes will be automatically loaded the next time you use - Jalview.