X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=c2fde1c7db35fe49d224f881055718b28314f375;hb=3add940f01642d753d5dda02c22f68913b1493e6;hp=7c0f170e0f4e7931d976b07f44881972703cb1be;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index 7c0f170..c2fde1c 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -19,33 +19,42 @@ * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. --> -User Defined Colours + +User Defined Colours + -

User Defined Colours

-

-

You may define any number of new colour schemes, each with a unique name.
-
- Each of the residues in a colour scheme may be assigned any chosen colour.
- Select one or more residues, then select the desired colour.
- Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
- Note that the currently selected buttons are highlighted by a lighter text colour.

- The Case Sensitive option allows you to choose distinct colours for upper and - lower case residue codes. + User Defined Colours +

+

+ +

+

+ You may define any number of new colour schemes, each with a unique + name.

Each of the residues in a colour scheme + may be assigned any chosen colour.
Select one or more + residues, then select the desired colour.
Use Ctrl-click to + select multiple residues, or click then Shift-click to select a + block.
Note that the currently selected buttons are + highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose + distinct colours for upper and lower case residue codes.

- Click Apply or OK to set your new colours on the active - alignment window.
- Click Cancel to undo your changes if you pressed the Apply - button. + The Colour All Lower Case option allows you to apply a selected colour + to all lower case residues. +

+ Click Apply or OK to set your new + colours on the active alignment window.
Click Cancel + to undo your changes if you pressed the Apply + button.

- If you save your colour scheme with a unique name, the colour scheme name will - be added to the Colour menu on each new alignment window.
+ If you save your colour scheme with a unique name, the colour scheme + name will be added to the + Colour menu on each new alignment window. +
+
Any saved colour schemes will be automatically loaded the + next time you use Jalview.
- Any saved colour schemes will be automatically loaded the next time you use - Jalview. -

- Note: the screenshot shows the appearance when running Java version 6. For Java 7 (from Jalview 2.8.2) only the Swatches colour chooser is - currently supported (for reasons of available screen space). -