X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhtml%2FcolourSchemes%2Fuser.html;h=c2fde1c7db35fe49d224f881055718b28314f375;hb=bebff77fbc2c22466b583bb6fd4ffc4ea330c75b;hp=c180e85f46360c31e92fed6c36fb265650710d7e;hpb=29cb169e896b943eaa832791c5bf754fb2cb7eee;p=jalview.git diff --git a/help/html/colourSchemes/user.html b/help/html/colourSchemes/user.html index c180e85..c2fde1c 100755 --- a/help/html/colourSchemes/user.html +++ b/help/html/colourSchemes/user.html @@ -1,7 +1,7 @@ -User Defined Colours + +User Defined Colours + -

User Defined Colours

-

-

You may define any number of new colour schemes, each with a unique name.
-
- Each of the residues in a colour scheme may be assigned any chosen colour.
- Select one or more residues, then select the desired colour.
- Use Ctrl-click to select multiple residues, or click then Shift-click to select a block.
- Note that the currently selected buttons are highlighted by a lighter text colour.

- The 'Case Sensitive' option allows you to choose distinct colours for upper and - lower case residue codes. + User Defined Colours +

+

+ +

+

+ You may define any number of new colour schemes, each with a unique + name.

Each of the residues in a colour scheme + may be assigned any chosen colour.
Select one or more + residues, then select the desired colour.
Use Ctrl-click to + select multiple residues, or click then Shift-click to select a + block.
Note that the currently selected buttons are + highlighted by a lighter text colour. +

+ The Case Sensitive option allows you to choose + distinct colours for upper and lower case residue codes.

- Click "Apply" or "OK" to set your new colours on the active - alignment window.
- Click "Cancel" to undo your changes if you pressed the "Apply" - button. + The Colour All Lower Case option allows you to apply a selected colour + to all lower case residues. +

+ Click Apply or OK to set your new + colours on the active alignment window.
Click Cancel + to undo your changes if you pressed the Apply + button.

- If you save your colour scheme with a unique name, the colour scheme name will - be added to the "Colour" menu on each new alignment window.
+ If you save your colour scheme with a unique name, the colour scheme + name will be added to the + Colour menu on each new alignment window. +
+
Any saved colour schemes will be automatically loaded the + next time you use Jalview.
- Any saved colour schemes will be automatically loaded the next time you use - Jalview.

- Note: the screenshot shows the appearance when running Java version 6. For Java 7, only the Swatches colour chooser is - currently supported (for reasons of available screen space). -